Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_75787710_75789018_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

75787710 - 75789018

Intron Length:

1309

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAA|GTATAAGTC

5'SS Class:

major

3'SS Sequence:

TTTTCTTTTTCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GTCTGAT

U12 Branch Point Sequence:

AATGTCTGATTT

Flanking Amino Acid:

PEIAALYFPKNGDNVQSKNT

Intron Amino Acid Position:

491

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

64.3

0.34

62.1

34.9

Major BPS

73.6

0.59

1.2

65.3

43.7

Major PPT

96.8

1.05

0.5

96.1

13.2

Minor 5ss

42.1

-0.9

3.5

58.4

40.9

Minor BPS

47.4

-0.1

1.7

63.85

40.8

Associated Gene:

Gene:

LPIN1

Ensembl Gene ID:

ENSAPLG00000013386

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000020483

75767524 - 75841034

73511

ENSAPLT00000034256

75767524 - 75808849

41326

ENSAPLT00000019241

75767524 - 75801421

33898

ENSAPLT00000033949

75762534 - 75801421

38888

ENSAPLT00000013995

75767524 - 75817716

50193

ENSAPLT00000028888

75767524 - 75841034

73511

ENSAPLT00000042282

75767225 - 75802791

35567

ENSAPLT00000026066

75767524 - 75825382

57859

ENSAPLT00000039155

75769315 - 75817716

48402