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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_75789113_75790538_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
75789113 - 75790538
Intron Length:
1426

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGCTG
5'SS Class:
major
3'SS Sequence:
CCATCCCTTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TATTTGTTAATA
Flanking Amino Acid:
DKTDSPTRKKDKRSRHLGAD
Intron Amino Acid Position:
460

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
66.7
44.4
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
75.8
0.58
0.8
68.4
31.7
Minor 5ss
33.7
-1.9
3.5
46.7
48.6
Minor BPS
63.3
0.41
2
75.8
35.8

Associated Gene:

Gene:
LPIN1
Ensembl Gene ID:
ENSAPLG00000013386
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020483
75767524 - 75841034
73511
ENSAPLT00000034256
75767524 - 75808849
41326
ENSAPLT00000019241
75767524 - 75801421
33898
ENSAPLT00000033949
75762534 - 75801421
38888
ENSAPLT00000013995
75767524 - 75817716
50193
ENSAPLT00000028888
75767524 - 75841034
73511
ENSAPLT00000042282
75767225 - 75802791
35567
ENSAPLT00000026066
75767524 - 75825382
57859
ENSAPLT00000039155
75769315 - 75817716
48402