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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_75791750_75796353_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
75791750 - 75796353
Intron Length:
4604

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGAACAG
5'SS Class:
major
3'SS Sequence:
TGCTTTTCTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAT
U12 Branch Point Sequence:
CATTGTTTATTT
Flanking Amino Acid:
HQSSHFSPPDSPSGSRPSTP
Intron Amino Acid Position:
313

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.4
0.46
1.1
55.8
43.2
Major BPS
84.4
0.85
1.1
84
34.5
Major PPT
86.3
0.82
0.7
84.6
30.3
Minor 5ss
29.3
-2.4
3.4
37.9
47
Minor BPS
49.3
0.03
2
68.17
43.6

Associated Gene:

Gene:
LPIN1
Ensembl Gene ID:
ENSAPLG00000013386
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020483
75767524 - 75841034
73511
ENSAPLT00000019241
75767524 - 75801421
33898
ENSAPLT00000013995
75767524 - 75817716
50193
ENSAPLT00000034256
75767524 - 75808849
41326
ENSAPLT00000026066
75767524 - 75825382
57859