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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_75791750_75797598_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
75791750 - 75797598
Intron Length:
5849

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTTTT
5'SS Class:
strong_major
3'SS Sequence:
TGCTTTTCTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAT
U12 Branch Point Sequence:
CATTGTTTATTT
Flanking Amino Acid:
HSDGEWSPLQSPSGSRPSTP
Intron Amino Acid Position:
297

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.9
0.92
0.9
89.8
23.7
Major BPS
84.4
0.85
1.1
84
34.5
Major PPT
86.3
0.82
0.7
84.6
30.3
Minor 5ss
46.2
-0.4
2.8
67.4
43.6
Minor BPS
49.3
0.03
2
68.17
43.6

Associated Gene:

Gene:
LPIN1
Ensembl Gene ID:
ENSAPLG00000013386
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033949
75762534 - 75801421
38888
ENSAPLT00000028888
75767524 - 75841034
73511
ENSAPLT00000042282
75767225 - 75802791
35567
ENSAPLT00000039155
75769315 - 75817716
48402