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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_75797719_75798098_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
75797719 - 75798098
Intron Length:
380

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTAGAG
5'SS Class:
major
3'SS Sequence:
TCCCTGTACCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
ATGTTTTTAAAT
Flanking Amino Acid:
EEEKEPLDNSRIPVPDVFVD
Intron Amino Acid Position:
237

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.5
0.51
1.1
60.6
38.2
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
64.5
0.33
0.9
57.4
37.7
Minor 5ss
35.9
-1.6
3.3
46.7
48.7
Minor BPS
68.3
0.65
1.3
78.91
37.3

Associated Gene:

Gene:
LPIN1
Ensembl Gene ID:
ENSAPLG00000013386
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026066
75767524 - 75825382
57859
ENSAPLT00000039155
75769315 - 75817716
48402
ENSAPLT00000020483
75767524 - 75841034
73511
ENSAPLT00000034256
75767524 - 75808849
41326
ENSAPLT00000019241
75767524 - 75801421
33898
ENSAPLT00000033949
75762534 - 75801421
38888
ENSAPLT00000013995
75767524 - 75817716
50193
ENSAPLT00000028888
75767524 - 75841034
73511
ENSAPLT00000042282
75767225 - 75802791
35567