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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_75801293_75808777_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
75801293 - 75808777
Intron Length:
7485

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTTTC
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TTTGTTTTATCT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.1
0.9
0.9
82.3
32.2
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
93.6
0.98
0.7
92.3
26.6
Minor 5ss
44.3
-0.6
2.8
53.4
43.8
Minor BPS
64
0.52
1.7
82.72
39.3

Associated Gene:

Gene:
LPIN1
Ensembl Gene ID:
ENSAPLG00000013386
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034256
75767524 - 75808849
41326