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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_75801293_75819728_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
75801293 - 75819728
Intron Length:
18436

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGGAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TTTGTTTTATCT
Flanking Amino Acid:
IRNVWTRNLNVQTMNYVGQL
Intron Amino Acid Position:
47

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
80.7
33.2
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
93.6
0.98
0.7
92.3
26.6
Minor 5ss
36.4
-1.5
3.4
53.2
44
Minor BPS
64
0.52
1.7
82.72
39.3

Associated Gene:

Gene:
LPIN1
Ensembl Gene ID:
ENSAPLG00000013386
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028888
75767524 - 75841034
73511
ENSAPLT00000026066
75767524 - 75825382
57859
ENSAPLT00000020483
75767524 - 75841034
73511