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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_75854520_75857269_R

Intron Information:

Intron Rank:
27
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
75854520 - 75857269
Intron Length:
2750

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCTTCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTATGAT
U12 Branch Point Sequence:
TTGCTCTGAATT
Flanking Amino Acid:
LTQNVQYNQNRFTCDDVDFN
Intron Amino Acid Position:
1688

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.3
1.09
0.7
86.7
22.1
Major BPS
72.3
0.55
1.1
63.4
42.8
Major PPT
86.9
0.83
0.7
80.3
31.7
Minor 5ss
32
-2.1
3.1
39.9
46.1
Minor BPS
64
0.52
1.4
77.93
38.6

Associated Gene:

Gene:
GREB1
Ensembl Gene ID:
ENSAPLG00000014229
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036096
75848527 - 75905152
56626
ENSAPLT00000014817
75848527 - 75905152
56626
ENSAPLT00000039391
75848527 - 75905152
56626