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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_75859905_75861576_R

Intron Information:

Intron Rank:
24
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
75859905 - 75861576
Intron Length:
1672

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGATGGA
5'SS Class:
major
3'SS Sequence:
CATTTATTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCACAT
U12 Branch Point Sequence:
TTTCCATTTATT
Flanking Amino Acid:
SMRLPLVTDKNEDYIKSPTF
Intron Amino Acid Position:
1489

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.4
0.6
1.1
65.7
40.5
Major BPS
77.7
0.69
1
83.3
27.7
Major PPT
83.2
0.75
0.8
76.7
36.1
Minor 5ss
30
-2.3
3.4
40.4
45.8
Minor BPS
59.8
0.39
1.9
83.13
37.4

Associated Gene:

Gene:
GREB1
Ensembl Gene ID:
ENSAPLG00000014229
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036096
75848527 - 75905152
56626
ENSAPLT00000014817
75848527 - 75905152
56626
ENSAPLT00000039391
75848527 - 75905152
56626