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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_75861739_75862541_R

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
75861739 - 75862541
Intron Length:
803

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGATT
5'SS Class:
strong_major
3'SS Sequence:
CCTCCATTATCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
TTTTCCTCCATT
Flanking Amino Acid:
QYMGFNPRYQLYESTLHAFA
Intron Amino Acid Position:
1435

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
84.9
32.1
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
72
0.49
0.9
70.1
34
Minor 5ss
37.6
-1.4
3.5
56.9
47.4
Minor BPS
65.7
0.57
2
88.16
37.4

Associated Gene:

Gene:
GREB1
Ensembl Gene ID:
ENSAPLG00000014229
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039391
75848527 - 75905152
56626
ENSAPLT00000036096
75848527 - 75905152
56626
ENSAPLT00000014817
75848527 - 75905152
56626