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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_75862685_75865075_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
75862685 - 75865075
Intron Length:
2391

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTAGAATT
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTTTAATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACATAT
U12 Branch Point Sequence:
CTTTTTTTAATA
Flanking Amino Acid:
CSKLQTINSEDRSMSRRQED
Intron Amino Acid Position:
1387

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
1.1
85.7
30.3
Major BPS
66.4
0.41
1
61.3
37
Major PPT
82.9
0.74
0.8
81
29.6
Minor 5ss
35.8
-1.6
3
49.8
46.1
Minor BPS
75.3
0.79
1.1
78
33.3

Associated Gene:

Gene:
GREB1
Ensembl Gene ID:
ENSAPLG00000014229
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036096
75848527 - 75905152
56626
ENSAPLT00000014817
75848527 - 75905152
56626
ENSAPLT00000039391
75848527 - 75905152
56626