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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_75876413_75877138_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
75876413 - 75877138
Intron Length:
726

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGAAGA
5'SS Class:
strong_major
3'SS Sequence:
TGTTTCTCTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
ATTACCATATCT
Flanking Amino Acid:
GMDPQGESLPRSLRYCDLRL
Intron Amino Acid Position:
999

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
1
72.1
39.5
Major BPS
100
1.24
0.5
100
0
Major PPT
85.8
0.81
0.8
77.8
36.7
Minor 5ss
33.3
-1.9
2.9
41.4
44.7
Minor BPS
57.6
0.32
1.9
80.66
40.5

Associated Gene:

Gene:
GREB1
Ensembl Gene ID:
ENSAPLG00000014229
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039391
75848527 - 75905152
56626
ENSAPLT00000036096
75848527 - 75905152
56626
ENSAPLT00000014817
75848527 - 75905152
56626