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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_75877255_75878755_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
75877255 - 75878755
Intron Length:
1501

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACGTAC
5'SS Class:
major
3'SS Sequence:
ATATTTTATGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TGTGCCATATCA
Flanking Amino Acid:
IGKHFVEQLKVWQKIEDVDW
Intron Amino Acid Position:
961

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1.2
70
37.3
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
78.9
0.65
1
74.4
39.7
Minor 5ss
42.6
-0.8
3.2
58.3
46.6
Minor BPS
51.7
0.05
2
69.19
42.8

Associated Gene:

Gene:
GREB1
Ensembl Gene ID:
ENSAPLG00000014229
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036096
75848527 - 75905152
56626
ENSAPLT00000014817
75848527 - 75905152
56626
ENSAPLT00000039391
75848527 - 75905152
56626