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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_75882219_75882300_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
75882219 - 75882300
Intron Length:
82

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGCTTATT
5'SS Class:
major
3'SS Sequence:
TCCATTTCTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTTAT
U12 Branch Point Sequence:
GTATCTGGAAAT
Flanking Amino Acid:
QQTLFHLWHSGILLELGLEK
Intron Amino Acid Position:
677

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1
80
34.7
Major BPS
83.6
0.84
0.8
71.9
35.8
Major PPT
78.5
0.64
0.8
77
31.6
Minor 5ss
35.2
-1.7
3.1
51.3
45.2
Minor BPS
46.7
-0.1
2.2
67.96
42.3

Associated Gene:

Gene:
GREB1
Ensembl Gene ID:
ENSAPLG00000014229
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036096
75848527 - 75905152
56626
ENSAPLT00000014817
75848527 - 75905152
56626
ENSAPLT00000039391
75848527 - 75905152
56626