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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_75883099_75885360_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
75883099 - 75885360
Intron Length:
2262

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGATCC
5'SS Class:
strong_major
3'SS Sequence:
TTCAATTTGATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAC
U12 Branch Point Sequence:
ATACTTTCAATT
Flanking Amino Acid:
RAIDSCIVITEGDIDLLLEK
Intron Amino Acid Position:
569

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.6
0.86
0.8
74.7
29.4
Major BPS
81.9
0.79
0.8
81.9
25
Major PPT
68.2
0.41
1
64.8
41
Minor 5ss
33.8
-1.8
3
42.5
44.5
Minor BPS
53.6
0.19
1.4
68.56
36.3

Associated Gene:

Gene:
GREB1
Ensembl Gene ID:
ENSAPLG00000014229
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014817
75848527 - 75905152
56626