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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_75884688_75885360_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
75884688 - 75885360
Intron Length:
673

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGATCC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAA
U12 Branch Point Sequence:
TTCAAAATGACT
Flanking Amino Acid:
RAIDSCIVITGKYQARILSE
Intron Amino Acid Position:
569

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.6
0.86
0.8
74.7
29.4
Major BPS
78.4
0.71
0.9
81.3
29.8
Major PPT
93.1
0.97
0.5
93.2
15.7
Minor 5ss
33.8
-1.8
3
42.5
44.5
Minor BPS
44.7
-0.3
2.1
67.63
42.5

Associated Gene:

Gene:
GREB1
Ensembl Gene ID:
ENSAPLG00000014229
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039391
75848527 - 75905152
56626
ENSAPLT00000036096
75848527 - 75905152
56626