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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_75886338_75886529_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
75886338 - 75886529
Intron Length:
192

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAAAA
5'SS Class:
strong_major
3'SS Sequence:
GTTCATTTCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TATTGTTCATTT
Flanking Amino Acid:
ICKAKPVIFKGHGNFPYLCG
Intron Amino Acid Position:
390

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
79.3
28.7
Major BPS
83
0.82
0.8
82
24.9
Major PPT
78.2
0.63
0.9
72
37.7
Minor 5ss
32.1
-2
3
39.7
45.8
Minor BPS
46.6
-0.1
2.1
68.92
42.7

Associated Gene:

Gene:
GREB1
Ensembl Gene ID:
ENSAPLG00000014229
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036096
75848527 - 75905152
56626
ENSAPLT00000014817
75848527 - 75905152
56626
ENSAPLT00000039391
75848527 - 75905152
56626