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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_75886668_75887360_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
75886668 - 75887360
Intron Length:
693

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGCTAT
5'SS Class:
strong_major
3'SS Sequence:
TGTACAATCTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
TCTCCAGTAATA
Flanking Amino Acid:
NPQVPNRIKNDGGSLSSLPH
Intron Amino Acid Position:
344

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
0.9
76.7
34.9
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
63.8
0.31
0.9
60.1
40.4
Minor 5ss
45.7
-0.5
2.9
61.3
44.6
Minor BPS
48.5
-0.1
2.2
65.77
40.9

Associated Gene:

Gene:
GREB1
Ensembl Gene ID:
ENSAPLG00000014229
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039391
75848527 - 75905152
56626
ENSAPLT00000036096
75848527 - 75905152
56626
ENSAPLT00000014817
75848527 - 75905152
56626