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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_75891473_75898225_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
75891473 - 75898225
Intron Length:
6753

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTGTC
5'SS Class:
strong_major
3'SS Sequence:
TTTATTTTATCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTATTTTATCA
Flanking Amino Acid:
PDDNGRNALLGFSGNCVGCG
Intron Amino Acid Position:
152

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.9
79.6
34.4
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
85.4
0.8
0.9
85.8
33.2
Minor 5ss
36.8
-1.5
3.3
44.3
43.6
Minor BPS
63.2
0.41
1.6
75.3
36.3

Associated Gene:

Gene:
GREB1
Ensembl Gene ID:
ENSAPLG00000014229
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039391
75848527 - 75905152
56626
ENSAPLT00000036096
75848527 - 75905152
56626
ENSAPLT00000014817
75848527 - 75905152
56626