Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_7592399_7593776_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

7592399 - 7593776

Intron Length:

1378

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CGG|GTAAGCCGA

5'SS Class:

major

3'SS Sequence:

TCTGTCCCACCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AGCTGAA

U12 Branch Point Sequence:

TCTGTCCCACCA

Flanking Amino Acid:

IQKRCMETKYGNAFSRNDSE

Intron Amino Acid Position:

142

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.2

0.64

1.1

59.8

46.7

Major BPS

58.2

0.2

1.1

49.1

Major PPT

71.3

0.48

0.9

63.6

38.2

Minor 5ss

36.8

-1.5

39.3

Minor BPS

42.1

-0.6

2.1

55.29

43.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000013064

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000013687

7591306 - 7600164

8859