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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_7593863_7594204_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7593863 - 7594204
Intron Length:
342

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTGAGCATT
5'SS Class:
major
3'SS Sequence:
CACCCTATCACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCCAC
U12 Branch Point Sequence:
GTGACCTAAGCT
Flanking Amino Acid:
SYCRRAVELTLGSLGVSSEL
Intron Amino Acid Position:
171

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.64
1
79.9
34.9
Major BPS
67.4
0.43
1.3
78.4
35.2
Major PPT
67.8
0.4
0.9
60.7
33.5
Minor 5ss
42.3
-0.9
3.1
62.3
42.4
Minor BPS
49.7
0.06
2
69.58
46.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013064
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013687
7591306 - 7600164
8859