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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_75952678_75955329_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
75952678 - 75955329
Intron Length:
2652

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACACGGC
5'SS Class:
major
3'SS Sequence:
CTTTTTTCTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TACATTTTAACT
Flanking Amino Acid:
LQPDTLRVSEPPMLNLNLDG
Intron Amino Acid Position:
30

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.4
0.43
1.1
55
43
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
91.5
0.93
0.6
84.7
30.2
Minor 5ss
35
-1.7
3.6
50.3
46.3
Minor BPS
68.3
0.65
1.3
77.15
39.5

Associated Gene:

Gene:
E2F6
Ensembl Gene ID:
ENSAPLG00000012476
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037395
75952591 - 75957915
5325
ENSAPLT00000012993
75952591 - 75961120
8530