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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_75956847_75957175_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
75956847 - 75957175
Intron Length:
329

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGT|GTAAGTGGG
5'SS Class:
major
3'SS Sequence:
CATATTCTTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
CTTGTATAAACA
Flanking Amino Acid:
QKRSKNLIQWVGSNLDQVVG
Intron Amino Acid Position:
118

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.7
0.51
1.1
60
44.9
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
74.8
0.56
0.9
66.2
40.3
Minor 5ss
34.1
-1.8
3.2
41
45.3
Minor BPS
48.1
-0.1
2
63.34
43.3

Associated Gene:

Gene:
E2F6
Ensembl Gene ID:
ENSAPLG00000012476
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012993
75952591 - 75961120
8530