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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_75958655_75960186_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
75958655 - 75960186
Intron Length:
1532

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
CATTGTTTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTAATAT
U12 Branch Point Sequence:
TTCTGGTTAATA
Flanking Amino Acid:
TKLEIPIPKEDCIEVHVKST
Intron Amino Acid Position:
210

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
90.7
21.1
Major BPS
67.5
0.44
1.1
63.7
42.3
Major PPT
77.6
0.62
0.9
69.5
41.3
Minor 5ss
47.8
-0.2
2.8
67.5
37.3
Minor BPS
51.4
0.04
2.4
70.44
42.7

Associated Gene:

Gene:
E2F6
Ensembl Gene ID:
ENSAPLG00000012476
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012993
75952591 - 75961120
8530