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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_75960335_75961068_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
75960335 - 75961068
Intron Length:
734

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGCGTCT
5'SS Class:
major
3'SS Sequence:
ACTTCCCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAC
U12 Branch Point Sequence:
TCCTCTTTCACT
Flanking Amino Acid:
ETEPSVPPGEE*
Intron Amino Acid Position:
259

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.5
0.41
1.2
64
42.9
Major BPS
77.7
0.69
1
81
30.2
Major PPT
81.5
0.71
0.8
77.8
30.2
Minor 5ss
43.5
-0.7
3.5
65.3
46.1
Minor BPS
65.6
0.57
1.8
78.9
44

Associated Gene:

Gene:
E2F6
Ensembl Gene ID:
ENSAPLG00000012476
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012993
75952591 - 75961120
8530