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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_7596554_7596898_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7596554 - 7596898
Intron Length:
345

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTGAGTCTG
5'SS Class:
major
3'SS Sequence:
TTCCACCTGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
CCTTTCTGACCC
Flanking Amino Acid:
LHRDLAARNCMLRDDMTVCV
Intron Amino Acid Position:
311

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.5
0.67
1
70.8
41
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
70
0.45
1
65.5
35.7
Minor 5ss
34.8
-1.7
3.1
45.9
42.4
Minor BPS
51.3
0.02
1.8
62.1
43.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013064
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013687
7591306 - 7600164
8859