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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_7601210_7602708_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7601210 - 7602708
Intron Length:
1499

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCAGT
5'SS Class:
strong_major
3'SS Sequence:
GCTGCGCCCGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTGAG
U12 Branch Point Sequence:
TGCGCCCCACTG
Flanking Amino Acid:
AARPAARASQSCLGRQQLLA
Intron Amino Acid Position:
32

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
77.8
38.7
Major BPS
48.9
-0
1.5
46.7
38.9
Major PPT
62.5
0.28
0.9
54
36.6
Minor 5ss
35.7
-1.6
3
48.8
47
Minor BPS
38.3
-1
2
40.59
43.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019080
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031758
7601117 - 7609229
8113