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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_76022661_76033163_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
76022661 - 76033163
Intron Length:
10503

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTTGC
5'SS Class:
strong_major
3'SS Sequence:
TAATTTGTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTTTATTTAATT
Flanking Amino Acid:
NKNIDNFLNRYEKIVEKIRA
Intron Amino Acid Position:
86

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.1
0.78
1
75.2
35.8
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
75.8
0.58
0.9
74
41.1
Minor 5ss
43
-0.8
2.8
57.2
40.7
Minor BPS
78.7
0.98
1.3
92.74
29.1

Associated Gene:

Gene:
ROCK2
Ensembl Gene ID:
ENSAPLG00000011393
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012040
75979440 - 76080000
100561
ENSAPLT00000043916
75979440 - 76081166
101727
ENSAPLT00000023715
75979396 - 76078739
99344