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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_7602869_7603079_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7602869 - 7603079
Intron Length:
211

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGTCCC
5'SS Class:
strong_major
3'SS Sequence:
GCAGCTCCCGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTGAT
U12 Branch Point Sequence:
CGTTCCTGATCC
Flanking Amino Acid:
LSKAAPEPAAVSCPALQAPA
Intron Amino Acid Position:
85

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.71
1
66.2
39.6
Major BPS
78.8
0.71
1
67.6
40.6
Major PPT
62
0.27
0.9
54.2
36.3
Minor 5ss
30.5
-2.2
2.8
37.9
39.5
Minor BPS
57.8
0.22
1.8
68.17
43

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019080
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031758
7601117 - 7609229
8113