About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_76033265_76040159_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
76033265 - 76040159
Intron Length:
6895

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGACTG
5'SS Class:
strong_major
3'SS Sequence:
TCTCAACTAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
TTCTTCTCAACT
Flanking Amino Acid:
GRGAFGEVQLVRHKMTQKVY
Intron Amino Acid Position:
120

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
1
68.2
42.8
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
68.9
0.43
1
62.7
37.2
Minor 5ss
35.7
-1.6
3.2
45.4
43.6
Minor BPS
73.9
0.83
1.5
87.74
37.8

Associated Gene:

Gene:
ROCK2
Ensembl Gene ID:
ENSAPLG00000011393
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043916
75979440 - 76081166
101727
ENSAPLT00000023715
75979396 - 76078739
99344
ENSAPLT00000012040
75979440 - 76080000
100561