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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_7604208_7604338_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7604208 - 7604338
Intron Length:
131

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTGGC
5'SS Class:
strong_major
3'SS Sequence:
CGGTGCCCCCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCACCAT
U12 Branch Point Sequence:
CCGCGCTCACCA
Flanking Amino Acid:
GAACQHRTQTVPPPLSATAD
Intron Amino Acid Position:
185

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
67.2
38.1
Major BPS
53
0.08
1.4
63
42.7
Major PPT
61.6
0.26
0.9
50.7
39.3
Minor 5ss
26.2
-2.7
3.2
34.3
42
Minor BPS
40
-0.7
2.1
44.22
44.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019080
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031758
7601117 - 7609229
8113