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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_76054985_76055844_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
76054985 - 76055844
Intron Length:
860

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGTAAA
5'SS Class:
major
3'SS Sequence:
CCCCCTTCTATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGTTGAT
U12 Branch Point Sequence:
TGAAGTTGATCT
Flanking Amino Acid:
DQWNWDNIRETAAPVVPELS
Intron Amino Acid Position:
378

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
77
33.6
Major BPS
72.4
0.56
1.1
63.1
44.4
Major PPT
73.3
0.53
0.7
67.7
25.9
Minor 5ss
36.3
-1.6
2.7
38.8
40.3
Minor BPS
42.6
-0.4
2
59.28
43.6

Associated Gene:

Gene:
ROCK2
Ensembl Gene ID:
ENSAPLG00000011393
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043916
75979440 - 76081166
101727
ENSAPLT00000023715
75979396 - 76078739
99344
ENSAPLT00000012040
75979440 - 76080000
100561