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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_76056005_76056726_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
76056005 - 76056726
Intron Length:
722

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTATGTGAG
5'SS Class:
major
3'SS Sequence:
TTGTTTTTGACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCGAAT
U12 Branch Point Sequence:
TTGTTTTTGACA
Flanking Amino Acid:
FIGFTYYRDNLLLSDSSQSC
Intron Amino Acid Position:
431

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.9
0.4
1.1
59.7
39
Major BPS
57.2
0.18
1.4
67.3
37.8
Major PPT
82
0.72
1
79.9
37.7
Minor 5ss
40.7
-1
3.2
54.1
44.6
Minor BPS
72.3
0.7
1.1
77.15
33.9

Associated Gene:

Gene:
ROCK2
Ensembl Gene ID:
ENSAPLG00000011393
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012040
75979440 - 76080000
100561
ENSAPLT00000043916
75979440 - 76081166
101727
ENSAPLT00000023715
75979396 - 76078739
99344