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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_76058743_76059030_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
76058743 - 76059030
Intron Length:
288

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAATA
5'SS Class:
strong_major
3'SS Sequence:
CAAATTCCTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TATTTTTCAAAT
Flanking Amino Acid:
QAKDELEQKYRSTNTRLEKI
Intron Amino Acid Position:
479

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.8
0.94
0.7
85.9
23.8
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
70.9
0.47
0.9
66.5
40
Minor 5ss
31.6
-2.1
3
39.7
45.8
Minor BPS
61
0.42
1.6
78.4
37.6

Associated Gene:

Gene:
ROCK2
Ensembl Gene ID:
ENSAPLG00000011393
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023715
75979396 - 76078739
99344
ENSAPLT00000012040
75979440 - 76080000
100561
ENSAPLT00000043916
75979440 - 76081166
101727