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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_76060173_76060415_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
76060173 - 76060415
Intron Length:
243

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAG|GCATGTCAA
5'SS Class:
strong_major
3'SS Sequence:
TATCAATCCTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTATCAATC
Flanking Amino Acid:
NEKINQLQRQLDEANSLLRS
Intron Amino Acid Position:
572

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.92
1
66.9
44.2
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
66.7
0.38
0.9
63.5
37.7
Minor 5ss
29.3
-2.4
3.8
40.2
45.9
Minor BPS
60.3
0.3
1.8
75.5
34.8

Associated Gene:

Gene:
ROCK2
Ensembl Gene ID:
ENSAPLG00000011393
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012040
75979440 - 76080000
100561
ENSAPLT00000043916
75979440 - 76081166
101727
ENSAPLT00000023715
75979396 - 76078739
99344