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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_76060663_76061004_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
76060663 - 76061004
Intron Length:
342

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTACAG
5'SS Class:
major
3'SS Sequence:
TGTTCATTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCAAAT
U12 Branch Point Sequence:
TTTTGTTCATTT
Flanking Amino Acid:
HGSEIISDLQGRISSLEEEV
Intron Amino Acid Position:
654

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.3
0.48
1.1
57.1
41.7
Major BPS
77.3
0.68
1
81.5
27
Major PPT
80.4
0.68
0.8
78.2
35.2
Minor 5ss
37.5
-1.4
3
47.5
47.9
Minor BPS
48.7
-0
2.1
75.55
42.1

Associated Gene:

Gene:
ROCK2
Ensembl Gene ID:
ENSAPLG00000011393
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043916
75979440 - 76081166
101727
ENSAPLT00000023715
75979396 - 76078739
99344
ENSAPLT00000012040
75979440 - 76080000
100561