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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_76063740_76064971_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
76063740 - 76064971
Intron Length:
1232

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGCAGA
5'SS Class:
major
3'SS Sequence:
TATTCCTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAA
U12 Branch Point Sequence:
TTTTCTTTAAAC
Flanking Amino Acid:
SLEKQNNELRKERQDADGQM
Intron Amino Acid Position:
858

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
71.7
40.1
Major BPS
78
0.7
0.9
79.6
29.1
Major PPT
81.7
0.71
0.8
74.1
36.2
Minor 5ss
40.5
-1.1
2.9
49
41.4
Minor BPS
82.1
0.99
1.2
87.66
28.2

Associated Gene:

Gene:
ROCK2
Ensembl Gene ID:
ENSAPLG00000011393
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043916
75979440 - 76081166
101727
ENSAPLT00000023715
75979396 - 76078739
99344
ENSAPLT00000012040
75979440 - 76080000
100561