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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_76065042_76066370_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
76065042 - 76066370
Intron Length:
1329

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTATGTTTT
5'SS Class:
strong_major
3'SS Sequence:
CTTTAAATTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
CCTACTTTAAAT
Flanking Amino Acid:
DQLEAEQYFSTLYKTQVREL
Intron Amino Acid Position:
882

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
80.9
34.1
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
72.9
0.51
0.9
63.8
41.5
Minor 5ss
59.5
0.32
2.3
76.1
39.5
Minor BPS
63.3
0.5
1.5
73.52
43.4

Associated Gene:

Gene:
ROCK2
Ensembl Gene ID:
ENSAPLG00000011393
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043916
75979440 - 76081166
101727
ENSAPLT00000023715
75979396 - 76078739
99344
ENSAPLT00000012040
75979440 - 76080000
100561