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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_76066799_76067125_F

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
76066799 - 76067125
Intron Length:
327

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTGAGTAAT
5'SS Class:
major
3'SS Sequence:
TTTTTGTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAG
U12 Branch Point Sequence:
TTTTAGTTACAT
Flanking Amino Acid:
LTEKDATIASLEEANRTLTS
Intron Amino Acid Position:
979

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.3
0.55
1.1
76.4
34
Major BPS
72.5
0.56
1.5
71.7
44.6
Major PPT
92.6
0.96
0.7
88.3
28.9
Minor 5ss
34.9
-1.7
3
52.2
44.4
Minor BPS
47.8
-0
2.5
78.16
43.8

Associated Gene:

Gene:
ROCK2
Ensembl Gene ID:
ENSAPLG00000011393
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012040
75979440 - 76080000
100561
ENSAPLT00000043916
75979440 - 76081166
101727
ENSAPLT00000023715
75979396 - 76078739
99344