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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_76069044_76071533_F

Intron Information:

Intron Rank:
27
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
76069044 - 76071533
Intron Length:
2490

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGACATTC
5'SS Class:
major
3'SS Sequence:
CTCTTATTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
TGTTCTTTAATA
Flanking Amino Acid:
SHSPTEVDSTESRLEGWLSL
Intron Amino Acid Position:
1219

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1.1
72
34.3
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
86.6
0.82
0.7
84.4
29.2
Minor 5ss
42.6
-0.8
3.1
59
45.7
Minor BPS
82.1
1
1
83.91
29.8

Associated Gene:

Gene:
ROCK2
Ensembl Gene ID:
ENSAPLG00000011393
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023715
75979396 - 76078739
99344
ENSAPLT00000012040
75979440 - 76080000
100561