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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_76072638_76073201_F

Intron Information:

Intron Rank:
29
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
76072638 - 76073201
Intron Length:
564

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGTATG
5'SS Class:
major
3'SS Sequence:
TAATTTCCTATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTTATTGAAAT
Flanking Amino Acid:
QSNPYMVLDIDKLFHVRPVT
Intron Amino Acid Position:
1272

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1
75.5
40.6
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
75.8
0.58
0.8
70.3
35.9
Minor 5ss
40.6
-1
2.8
48.1
41.6
Minor BPS
57.1
0.3
1.7
77.98
37.6

Associated Gene:

Gene:
ROCK2
Ensembl Gene ID:
ENSAPLG00000011393
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043916
75979440 - 76081166
101727
ENSAPLT00000023715
75979396 - 76078739
99344
ENSAPLT00000012040
75979440 - 76080000
100561