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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_76073281_76073492_F

Intron Information:

Intron Rank:
30
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
76073281 - 76073492
Intron Length:
212

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTTAAT
5'SS Class:
major
3'SS Sequence:
GCCTTGATTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
TTTGCCTTGATT
Flanking Amino Acid:
DAKEIPRIFQILYANEGESK
Intron Amino Acid Position:
1299

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1
80
34.7
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
67.6
0.4
0.9
58.3
42
Minor 5ss
36.4
-1.5
3
51.3
45.2
Minor BPS
78.7
0.98
1.2
90.9
33.1

Associated Gene:

Gene:
ROCK2
Ensembl Gene ID:
ENSAPLG00000011393
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023715
75979396 - 76078739
99344
ENSAPLT00000012040
75979440 - 76080000
100561
ENSAPLT00000043916
75979440 - 76081166
101727