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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_760765_761625_F

Intron Information:

Intron Rank:
129234
Intron Class:
major
Intron Phase:
Intron Coordinates:
760765 - 761625
Intron Length:
861

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTAGGTAAC
5'SS Class:
major
3'SS Sequence:
TCTTCATTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
ACCTCTTCATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.9
0.37
1.2
65.3
40.8
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
87.3
0.84
0.7
85
28.5
Minor 5ss
36.6
-1.5
3.1
45.5
42.9
Minor BPS
48
-0
1.8
61.72
43.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019517
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023579
758392 - 762613
4222