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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_76092778_76094015_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
76092778 - 76094015
Intron Length:
1238

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
ACGTGCTTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTAAT
U12 Branch Point Sequence:
TTCTCTTTACGT
Flanking Amino Acid:
LRRWIIDLAMNLCTLISAAS
Intron Amino Acid Position:
102

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.7
0.91
0.8
80.6
31.8
Major BPS
78.2
0.7
1
77.9
32.1
Major PPT
74
0.54
1
69.5
41.1
Minor 5ss
35.5
-1.6
3.3
47.5
42.3
Minor BPS
59.7
0.38
1.9
78.9
44

Associated Gene:

Gene:
SLC66A3
Ensembl Gene ID:
ENSAPLG00000030742
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019338
76092484 - 76097449
4966