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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_76106670_76107340_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
76106670 - 76107340
Intron Length:
671

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTTTC
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTCATTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTAAT
U12 Branch Point Sequence:
TTAGCATTAATG
Flanking Amino Acid:
WSFLKDYDQMGNKKEHKPLP
Intron Amino Acid Position:
150

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.9
0.94
0.8
84
27.9
Major BPS
79.4
0.73
0.9
79.6
29.1
Major PPT
83.1
0.74
0.9
82
34.8
Minor 5ss
44.9
-0.5
2.8
58.5
40.5
Minor BPS
59.3
0.16
1.8
65.41
42.5

Associated Gene:

Gene:
C2orf50
Ensembl Gene ID:
ENSAPLG00000011213
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011666
76106470 - 76110127
3658