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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_76107381_76109720_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
76107381 - 76109720
Intron Length:
2340

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTCAC
5'SS Class:
strong_major
3'SS Sequence:
CTTCTATTCCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
CATTTTTTACTT
Flanking Amino Acid:
VEAEQRGRKIWYQNWSFLKD
Intron Amino Acid Position:
136

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
0.9
74.1
36.5
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
69.3
0.43
1
67.6
37
Minor 5ss
34.7
-1.7
2.9
41.5
39.2
Minor BPS
58.1
0.33
1.6
71.67
40.4

Associated Gene:

Gene:
C2orf50
Ensembl Gene ID:
ENSAPLG00000011213
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011666
76106470 - 76110127
3658