About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_76117308_76118273_F

Intron Information:

Intron Rank:
146078
Intron Class:
major
Intron Phase:
Intron Coordinates:
76117308 - 76118273
Intron Length:
966

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCTTTCTT
5'SS Class:
major
3'SS Sequence:
TCATTCCTGATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TATTCCTAAATG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.9
0.33
1.3
67.2
43.7
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
68.8
0.42
1
65.5
36
Minor 5ss
41.7
-0.9
2.9
59.7
44.7
Minor BPS
68.6
0.45
1.7
72.44
40.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028705
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038055
76115025 - 76119860
4836
ENSAPLT00000024582
76116268 - 76119860
3593