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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_76118422_76118977_F

Intron Information:

Intron Rank:
146079
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
76118422 - 76118977
Intron Length:
556

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGACTC
5'SS Class:
major
3'SS Sequence:
AAAATTGCCACAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
ATATATTTAAAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
0.9
67.7
37.5
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
58.8
0.2
1
50.5
42.8
Minor 5ss
31.2
-2.1
3.2
39.7
40.1
Minor BPS
60.5
0.33
1.6
69.27
36.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028705
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038055
76115025 - 76119860
4836
ENSAPLT00000024582
76116268 - 76119860
3593