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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_7612037_7633032_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7612037 - 7633032
Intron Length:
20996

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGAAC
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTCCTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTTATTGTATT
Flanking Amino Acid:
LEGRGRRMPWREDGELEDGE
Intron Amino Acid Position:
105

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.1
0.97
0.8
82.1
31
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
86.4
0.82
0.7
80.7
24.7
Minor 5ss
32.6
-2
3.1
42.1
45
Minor BPS
50.1
0.08
1.9
77.49
39.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027404
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022466
7611723 - 7668878
57156