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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_76146619_76148317_F

Intron Information:

Intron Rank:
125684
Intron Class:
major
Intron Phase:
Intron Coordinates:
76146619 - 76148317
Intron Length:
1699

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACTTAAA
5'SS Class:
major
3'SS Sequence:
TTCCTGGTTGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAGTAAT
U12 Branch Point Sequence:
CCACTAGTAATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1
76.2
34.5
Major BPS
76.6
0.66
1.1
75.9
36.3
Major PPT
74
0.54
0.9
68.7
37.2
Minor 5ss
34
-1.8
2.9
42.5
44.3
Minor BPS
40.6
-0.7
2
44.76
37.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017695
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030187
76146027 - 76148761
2735